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Reliable analysis of ploidy level and genome size for plant breeding, seed production and research.

  • Solutions for Breeding, Seed Production and Research | Plant DNA

Ploidy level and genome size as key parameters of plant analysis

Precisely Determine Ploidy Level and Genome Size with Sysmex Partec

Determining ploidy level is a key parameter for the genetic characterization of plant material in the breeding and production of plants and seeds. In the development of new varieties and cultivars, deliberate changes in ploidy level require regular monitoring of plant material.

Routine verification of ploidy as part of end-product quality control is often essential to detect spontaneous changes in ploidy level and aneuploidy. In basic botanical research, ploidy level and genome size of the material under investigation are important parameters for addressing fundamental questions in disciplines such as population biology, evolutionary biology, and systematics.

Plant in Petri dish with tweezers
Analysis of plant samples in the laboratory

Challenges in the genetic analysis of plants

The genetic analysis of plant samples is complex – especially when it comes to speed, precision and material diversity. In practice, breeding, seed production and research face specific challenges that require reliable technologies and specialized solutions.

Common challenges:

  • Simple, safe and fast analysis of ploidy level and genome size
  • Automated sample preparation, measurement and data analysis
  • High-throughput ploidy determinations
  • Highest precision for determining genome size and aneuploidies
  • Reliable determination even with problematic materials (e.g. higher content of phenolic or aromatic ingredients)

Applications of Plant DNA Analysis

Flow cytometry-based determination of ploidy level and genome size is a central component of modern plant analysis. It supports breeding programs, production control and scientific studies – reliably, efficiently and precisely.

Application for our solutions:

  • Quality control of plants and seeds
  • Verification of ploidy level within breeding programs for the production of new varieties and cultivars
  • Ploidy monitoring of in vitro cultures to ensure genetic stability
  • Determination of hybrid lines
  • Precise, high-resolution genome size and ploidy determination in different field materials
  • Characterization of materials in gene databases
  • High-throughput ploidy determinations
  • and more

Do you have questions or technical problems?
Our experts have the answers.

We provide precise, rapid and reliable microbiological quality control for demanding applications.

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#SPGsolutions Plant DNA

Application fields

  • Breeding

    Develop new varieties and cultivars through targeted ploidy control

  • Production

    Quality control in animals, plants and seeds

  • Research

    Gain insight into genetic questions through precise DNA analysis

  • Screening

    Efficient high-throughput analysis for large sample quantities

Female and male scientists checking plant samples in a laboratory environment
Plant DNA

Solutions for Plant DNA


With our complete package consisting of reagents tailored to plant DNA analysis, instruments, software, accessories and expert support, Sysmex Partec ensures that users from industry, science and research are always well equipped.

Products for Plant DNA

We offer customized solutions for determining ploidy and genome size, based on over 50 years of experience in flow cytometry of plant DNA content, no matter what plant material you are working with – whether you want to screen samples in high throughput or examine a few plants for their DNA content with the highest precision.

CyStain™ UV Precise P - CyStain™ UV Precise T - CyStain™ UV Precise P “automate” - CyStain™ UV Precise T “automate”

Reagent kits for ploidy determination, including lysis buffer for nuclear extraction and staining buffer for fluorescence staining (DAPI) of nuclear DNA from plant tissues. “automate” – special package size for sample preparation in microtiter plates.

CyStain PI Absolute P - CyStain PI Absolute T

Reagent kits for ploidy and genome size determination, including lysis buffer for nuclear extraction and staining buffer for fluorescence staining (propidium iodide) of nuclear DNA from plant tissues.

CyFlow™ RP-300 and CyFlow™ RP-310 Ploidy Analyzer

RP analyzers provide flow cytometry results on ploidy level and genome size from plant and animal material – precise, rapid, reliable and standardized.

CyFlow™ AL-30 Autoloader

CyFlow™ AL-30 Autoloader, in combination with CyFlow™ RP Ploidy Analyzers, enables automated, rapid and efficient analysis of large sample numbers.

CyStain UV Ploidy

One-step, ready-to-use solution for ploidy determination, enabling rapid fluorescence staining of nuclear DNA. Combined lysis and staining buffer.

CyStain PI OxProtect

One-step, ready-to-use solution for ploidy and genome size determination of oxidation-sensitive plant material, enabling rapid fluorescence staining of nuclear DNA. Combined lysis and staining buffer.

CellTrics™ Filter

CellTrics™ cell filters are used to filter plant samples, for example after nuclear extraction. Cell nuclei pass through the filter membrane, while tissue fragments are retained.

Sysmex Partec – Innovative, Comprehensive Solutions for
Cell analysis Particle analysis Industrial applications Flow cytometry

Reliable cell and particle analysis – experience you can build on

With decades of experience in cell and particle analysis, Sysmex Partec provides powerful solutions tailored to the needs of industrial applications. Our hardware and software deliver fast, precise results – directly on site in production.

Through scientifically validated methods and development in accordance with EN ISO 13485, we ensure the highest quality and reproducibility. Our adaptable, customer-specific solutions are developed in close collaboration with our clients – for maximum efficiency and accuracy.

Our international support structure and practice-oriented training programs ensure smooth implementation and sustainable use. As the only provider on the market, we offer a true end-to-end solution from a single source – from development to application.

With our innovative flow cytometry solutions, we enable precise, fast, and reliable tests for microbiological quality control and process optimization – in the beverage, food, cosmetics, water, paper, and ploidy industries.

Opening Hours:

Monday – Friday: 8:00 AM – 4:00 PM
Saturday & Sunday: Closed

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